1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcacctatttctacctataatctatttgattgtgttgggctttattttttcattttccttagggtttgtgtttctgattacttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACAT
species | Glycine max |
transcript | GLYMA08G19620.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|193352345|gb|FK314319.1|FK314319
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: GAAGTCGTACGACAAGGTTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGEST: gi|192297847|gb|FG988331.1|FG988331
genomic: GAAGTCGTACGACAAGG-TTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAG
EST: CGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|33387927|gb|CA851134.1|CA851134
genomic: CGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|58024842|gb|CX711583.1|CX711583
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|151407739|gb|EV277554.1|EV277554
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|8403794|gb|BE059361.1|BE059361
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|16347790|gb|BI973385.1|BI973385
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|298184345|gb|HO029558.1|HO029558
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAAGACGATTGACCCTACACAATTCACEST: gi|192294140|gb|FG986229.1|FG986229
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|58020870|gb|CX707612.1|CX707612
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|58020675|gb|CX707417.1|CX707417
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|254347672|gb|GR853921.1|GR853921
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|14258420|gb|BG881328.1|BG881328
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCANGACGATTGGCCCTACACAATTCACEST: gi|192334803|gb|FK025952.1|FK025952
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|9564042|gb|BE473551.1|BE473551
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|58017178|gb|CX703920.1|CX703920
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|298180054|gb|HO025269.1|HO025269
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACEST: gi|192295778|gb|FG992604.1|FG992604
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: AAGGTTGCGGATGTGTGCGACAACTTGGTGCTTCAG GTTGCAGCTGAGGGCATTGCTCATCAGGACGATTGGCCCTACACAATTCAC
genomic: AAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
gggctttattttttcattttccttagggtttgtgtttctgattacttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACAT
ttctgat putative branch site (score: 3)
ttacttc CT-rich tract
ttattttttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacctatttctacctataatctatttgattgtgttgggctttattttttcattttccttagggtttgtgtttctgattacttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACAT
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