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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTCACTCGCGTCGAATTGAGgtaccgtatggctacggtagtgccgtgtttggttgcgtaaaacaactcgcgttaactggttttttttaatcgaggttagcttctttggtttttttgctgctatag

Basic information

species Glycine max
transcript GLYMA08G19620.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322362|gb|FK014603.1|FK014603
EST:     GGTTTTCACTCGCGTCGAATTGAG                         GAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
genomic: GGTTTTCACTCGCGTCGAATTGAGgtaccgtatg ... gctgctatagGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
EST: gi|33387927|gb|CA851134.1|CA851134
EST:     TTTTCACTCGCGTCGAATTGAG                         GAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
genomic: TTTTCACTCGCGTCGAATTGAGgtaccgtatg ... gctgctatagGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
EST: gi|298184345|gb|HO029558.1|HO029558
EST:     GGTTTTCACTCGCGTCGAATTGAG                         GAATTGGGAGTGATGGATTTCTCTTCGGTGTGGGCTGCGTTGGATTCGAAG
genomic: GGTTTTCACTCGCGTCGAATTGAGgtaccgtatg ... gctgctatagGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
EST: gi|192294140|gb|FG986229.1|FG986229
EST:     GGTTTTCACTCGCGTCGAATTGAG                         GAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
genomic: GGTTTTCACTCGCGTCGAATTGAGgtaccgtatg ... gctgctatagGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
EST: gi|192334803|gb|FK025952.1|FK025952
EST:     GGTTTTCACTCGCGTCGAATTGAG                         GAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
genomic: GGTTTTCACTCGCGTCGAATTGAGgtaccgtatg ... gctgctatagGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
EST: gi|298180054|gb|HO025269.1|HO025269
EST:     TTTCACTCGCGTCGAATTGAG                         GAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG
genomic: TTTCACTCGCGTCGAATTGAGgtaccgtatg ... gctgctatagGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAG