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...tcaggtgcatgtaattccaatttgtgggaaggggatgtaaaatcaaaaatcctaccctgaacctatagtgataacataagttttgtaatttgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCCCCAGTCTGTGGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAG
species | Glycine max |
transcript | GLYMA07G03260.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|31472542|gb|CD414570.1|CD414570
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCATCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|5510083|gb|AI856467.1|AI856467
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: TTACAACTGAGAG ATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|209727722|gb|BW658459.1|BW658459
genomic: TTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|31466823|gb|CD408851.1|CD408851
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|16342366|gb|BI967961.1|BI967961
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|31476274|gb|CD418302.1|CD418302
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|209703109|gb|BW673294.1|BW673294
genomic: AGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|5510381|gb|AI856698.1|AI856698
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|31463415|gb|CD405443.1|CD405443
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCCEST: gi|31466761|gb|CD408789.1|CD408789
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
EST: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAG ATGGGATAAACCAATGCTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
genomic: AACTTCAAAGGTACTTTCAGTGAAATATCAGCAGGATTTACAACTGAGAGgtatatttat ... tgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCC
aaaatcctaccctgaacctatagtgataacataagttttgtaatttgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCCCCAGTCTGTGGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAG
tgataac putative branch site (score: 2)
ataacataagttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaggtgcatgtaattccaatttgtgggaaggggatgtaaaatcaaaaatcctaccctgaacctatagtgataacataagttttgtaatttgtattacagATGGGATAAACCAATACTACTTGCTTGGGGATTATCAGACAAGTACTTGCCCCAGTCTGTGGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - gcatgta
- - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - ggggatg