Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaggaatttttactgcagaaacctcatactcataaatgtttttctttcatttctcatag

Basic information

species Glycine max
transcript GLYMA07G03260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03260.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g55180.2 (Oryza sativa), 5'ss of exon 4
TTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaggaatttttactgcagaaacctcatactcataaatgtttttctttcatttctcatag
 || | ||||| || | |||||||||||| || || |||||||||||||| |||||||| |  ||||| || |||||||| ||  | ||||||||| |     |     ||  |  |  |   |  |||   |  | |  ||  |||||    ||   ||| |    | ||          
ATGGCAGATGCTGGCTACCACTGCTTTGCTCCTGATTGGATAGGATTTGGGTTCAGTGATATGCCACAGCCCGGATATGGATTCGACTACACAGgtgtggccgt-gtggcaaatgttgacaaaattaatgaatcttactaaactctcatttatat---tgtatcatgtgcag---------

upper sequence: GLYMA07G03260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G117531_T04 (Zea mays), 5'ss of exon 4
TTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcataatca---aaacatcttatatcttgag-gaatttttactgcagaaacctcatactcataaatgtttttctttcatttctca--tag--------
 || | ||||| || | ||||||||||||||| |||||||| |||||||| |||||||| |  |||||||| |||||||| ||  | |  | ||||     ||      |   | || || ||  |   | ||   ||     |||  | ||| || ||||  ||  ||    ||| | |||  ||         
ATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAGgtcaggaaaatgtgtattaaactaatgtcccgtttggatcactagaattgaattc-cattctaataatagtaatttaggcatatatcaattaagctaattc

upper sequence: GLYMA07G03260.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaggaatttttactgcagaaacctcatactcataaatgtttttctttcatttctcatag
||||| ||||| || || || ||||||||||| |||||||||||||| || |||||||||||||| || || ||||| |||||||||||||||||||   | ||    |||| | |||  ||| | | |    | |      || |  | ||      |  |    ||| | |  ||  ||
TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgat-ggtacatttaatagtttgtgaactgcaaaatcagtgtacatggttctttgttctaataagttttaaatcttctcag

upper sequence: GLYMA07G03260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 4
TTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcata------atcaaaacatctta--tatcttg--------aggaatttttactgcagaaacctcatactcataaatgtttttctttcatttctcatag
 |||| ||||  ||||| ||||| |||||||| || |||||||| |||||||||||||| || ||| |  |||||||||| ||| | ||||||||| |  ||      ||  |   ||||||  ||| ||         |  | |||||  |  | ||  ||||   | || ||  ||| ||||     | |   ||
ATGTCAGATGTTGGGTTTCACTGTTTTGCACCTGATTGGATAGGCTTTGGTTTCAGTGAGAAGCCATATTCAGGATATGGATTTGACTACACAGgtcttttatttttcatatagtaatcttaattatgttatcagttgtattattttttgttatataacgctcaactttatgaagttttctcttcttactgtatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687352|gb|BF594992.1|BF594992
EST:     ATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAG                         AAAAAGAGTTC
genomic: ATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAGgtttcataat ... tttctcatagAAAAGGAGTTC