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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTATCTGTATCTTAAGCTGGTTCAGGACATCATTGCTGAAGGTACAACTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttcaactttcaattgggatattaagggttgctgtagtttatatgctgactttgtctctatatttgcacag

Basic information

species Glycine max
transcript GLYMA06G01280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGTATCTGTATCTTAAGCTGGTTCAGGACATCATTGCTGAAGGTACAACTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttcaactttcaattgggatattaaggg-ttgctgtagtttatatgctgacttt------gtctctatatttgcacag------
||| ||||| ||  | || |||||  | || || ||  |  | || |     || |  |||||||||||||||||||| || || ||||||||||| ||||| |  |   |  |   |||  | || | || |  ||| | | ||||   |    |   |       | || |||| |    |       
GGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGgtgagttactacttcataatatgtatctgaatgtcttgttctggtttgcttatcaaaagttaacaaatttccatatctttggatccacag

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTATCTGTATCTTAAGCTGGTTCAGGACATCATTGCTGAAGGTACAACTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttcaactttcaattgggatattaagggttgctgtagtttatatgctgactttgtctctatatttg-cacag
||||| ||||||| | ||  ||||| | || || ||  || | || |     |||  ||||||||| ||||||||||| || |||||||||||||||||||| | ||   | |  |   ||    ||||  |  |  || |||||  |    |||  |    | |   |    |||||
GGAGTTTCTGTATTTGAATATGGTTGAAGATATTATCTCTAATGGCAATGTGAAGAATGATAGGACCGGGACTGGTACATTATCAAAATTTGGTTGCCAGgtgatataa-atccgtttctttatgtattctgtttatctctagttggttaaatgatctcacatttccttggaacacag

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTATCTGTATCTTAAGCTGGTTCAGGACATCATTGCTGAAGGTACAACTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttcaactttcaattgggatattaagggttgctgtagtttatatgctgactttgtctctatatttgcacag------------------------------------------------
||| ||  | ||||| |   ||||| | ||||||||  |  | |||      | || ||||||||||||||||||||| || ||||| |||||||||||||||    | | | |||||  |   ||    || |||| |   |||  | | |||| | | | | |  |||   |  |                                                
GGAATACATCTATCTGAGATTGGTTGAAGACATCATCTCAAATGGTGTTCAAAGGGATGATAGGACAGGGACTGGTACTTTATCAAAGTTTGGTTGCCAGgta---ctgctaatttcagat--aattgagagagttggtcatgttcctcttctgaatgtatgtttccatt-atatggttttatattcaactattgaccagtgtagtaatcaatttttattcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168442|gb|HO009372.1|HO009372
EST:     CTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAG                         ATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAG
genomic: CTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttc ... atttgcacagATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAG