Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGTCTGTCTAAAATCTGGGGATTCTCACTCCTTCAGGTTGTTTCTGCTTTTTGAAATGAGgcaagaatgtactttatttatttttatatatagaactctgcttgatactgttgtaaccattattatttatataaaaggagattcatagaatgtggtttgg...

Basic information

species Glycine max
transcript GLYMA06G01280.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 11
CTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGTCTGTCTAAAATCTGGG-GATTCTCACTCCTTCAGGTTGTTTCTGCTTTTTGAAATGAGgcaagaatgtactttatttatttttatatatagaactctgcttgatactgttgtaaccattattatttatataaaaggagattcatagaat--gtggtttgg--------
        || |||        | | ||||  |  |  ||  || | ||  || ||||  | || | |  |   |  |  | ||    |          |   ||    ||| |    |    ||||||     |     ||||   | ||||  ||   ||  |   | | | | || ||||| || | |   ||  ||  |        
-------CCTTTGAAGAAGGATATA-GATTCTTTCGTGGC-ATCAGACTTCAAGCTGGTCGGTTATGATCCTCACCAGAAGATTGAAATGAAAATGGCAATATAATTTGgtattcctctagcatttatactcgtactgacgcttttca-tgtttcaatatttgcttgctgtctgatagaagatt-atggtaccagtacttatgatgcacgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524702|gb|BU083513.1|BU083513
EST:     AAATCTGGGGATTCTCACTCCTTCAGGTTGTTTCTGCTTTTTGAAATGAG                         GCACAACCTTAGGAAGATTATGTTAAATCTGTGTACAATTAAAGAACATAT
genomic: AAATCTGGGGATTCTCACTCCTTCAGGTTGTTTCTGCTTTTTGAAATGAGgcaagaatgt ... tttgtttcagGCACAACCTTAGGAAGATTATGTTAAATCTGTGTACAATTAAAGAACATAT