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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatttcaactttcaattgggatattaagggttgctgtagtttatatgctgactttgtctctatatttgcacagATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAG

Basic information

species Glycine max
transcript GLYMA06G01280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168442|gb|HO009372.1|HO009372
EST:     CTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAG                         ATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAG
genomic: CTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttc ... atttgcacagATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatattaagggttgctgtagtttatatgctgactttgtctctatatttgcacagATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAG
                           tgctgac  putative branch site (score: 2)
                  tagtttatat  TA-rich tract