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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattcttaacattagctatatatatagtgctaccatatatttgtctctagaactagaagtgtagatgtatttttctattgttaaatctgcactgtcattgttctgctgaaaaacag

Basic information

species Glycine max
transcript GLYMA04G40100.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40100.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03070.t01 (Vitis vinifera), 5'ss of exon 4
GAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattcttaacattagctatatatatagtgctaccatatatttgtctctagaactagaagtgtagatgtatttttctattgttaaatctgcactgtcattgttctgctgaaaaacag
 | || ||  |  |||||||||||||||| ||||| |||||||| || ||||| ||||| || || || |||||  ||||     |  | | ||   |  |   ||         || |||        |    | | | |||  || |   ||  || ||||  |||||   ||  | |           
CAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAAgta--attc-----accaaccatgactgcaacact---------ttttcttcctgttcatggctatggttgttcttgttgcttactagatcttgactgtgtatgcacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268490|gb|CA819553.1|CA819553
EST:     GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA                         GTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
genomic: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattct ... tgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
EST: gi|151395777|gb|EV265654.1|EV265654
EST:     GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA                         GTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
genomic: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattct ... tgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
EST: gi|10255796|gb|BE823562.1|BE823562
EST:     GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA                         GTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
genomic: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattct ... tgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC