1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaattcttaacattagctatatatatagtgctaccatatatttgtctctagaactagaagtgtagatgtatttttctattgttaaatctgcactgtcattgttctgctgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCTGATGTAAGAAAACTGACATGTCAGTTAATGAATTGAGAAAGTGAGATT
species | Glycine max |
transcript | GLYMA04G40100.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA GTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCEST: gi|151395777|gb|EV265654.1|EV265654
genomic: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattct ... tgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
EST: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA GTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCEST: gi|10255796|gb|BE823562.1|BE823562
genomic: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattct ... tgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
EST: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA GTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
genomic: GTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattct ... tgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATC
tagatgtatttttctattgttaaatctgcactgtcattgttctgctgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCTGATGTAAGAAAACTGACATGTCAGTTAATGAATTGAGAAAGTGAGATT
ttctgct CT-rich tract
tatttttctattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattcttaacattagctatatatatagtgctaccatatatttgtctctagaactagaagtgtagatgtatttttctattgttaaatctgcactgtcattgttctgctgaaaaacagGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCTGATGTAAGAAAACTGACATGTCAGTTAATGAATTGAGAAAGTGAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA