1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TATTTGGAGCCTGAAGTAGTTGGCCACTTGGAGCAGTTCAAAGGAATATCTGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatgatccatagtatccctaaagtactgtcaaatatgaaaatatctctttaataagaacccatctattcattaatcgatatcaatggactaggaa...
species | Glycine max |
transcript | GLYMA04G40030.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|254342752|gb|GR858914.1|GR858914
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|192302413|gb|FG997353.1|FG997353
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: GCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTTTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|298179554|gb|HO028025.1|HO028025
genomic: GCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|192305625|gb|FG994335.1|FG994335
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGCGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|58020389|gb|CX707131.1|CX707131
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|151404578|gb|EV274392.1|EV274392
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|26268875|gb|CA819938.1|CA819938
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|151393172|gb|EV263047.1|EV263047
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|9901324|gb|BE610292.1|BE610292
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|298168598|gb|HO009528.1|HO009528
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|192327228|gb|FK019535.1|FK019535
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|254320382|gb|GR826399.1|GR826399
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|254320381|gb|GR826398.1|GR826398
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|7588785|gb|AW704573.1|AW704573
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|58017161|gb|CX703903.1|CX703903
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|192302412|gb|FG997352.1|FG997352
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|9899641|gb|BE608609.1|BE608609
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|151394357|gb|EV264228.1|EV264228
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|21285634|gb|BQ473505.1|BQ473505
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|192305626|gb|FG994336.1|FG994336
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: AAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGCGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGEST: gi|254342751|gb|GR858913.1|GR858913
genomic: AAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
EST: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTG CTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
genomic: TGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatga ... taatgtacagCTCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTGGAGCCTGAAGTAGTTGGCCACTTGGAGCAGTTCAAAGGAATATCTGCAAAGGAGCTGGAAGAGAACGATGAGTTCTTCAATGCTCTCATTTCTGgtaattatgatccatagtatccctaaagtactgtcaaatatgaaaatatctctttaataagaacccatctattcattaatcgatatcaatggactaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA