Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCTAATTAACTCACCCTTTTTGTCAAAACTTCTCTCAACGTTTGCTCACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctctctctctctctctctttctctccctcaatccaatgagttgctaactgttctttattgattttaattagccttttaggtgcttatatctaagagaaatattgtttgttttgtgaatttaatttcag

Basic information

species Glycine max
transcript GLYMA04G40030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815653|gb|BI787928.1|BI787928
EST:     CTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: CTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|298179554|gb|HO028025.1|HO028025
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|192305625|gb|FG994335.1|FG994335
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|58020389|gb|CX707131.1|CX707131
EST:     TCTCCATCTCCATCAATTTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: TCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|151404578|gb|EV274392.1|EV274392
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|26268875|gb|CA819938.1|CA819938
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|151393172|gb|EV263047.1|EV263047
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|193362524|gb|FK325334.1|FK325334
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|9901324|gb|BE610292.1|BE610292
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|298168598|gb|HO009528.1|HO009528
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|192327228|gb|FK019535.1|FK019535
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|298194360|gb|HO041008.1|HO041008
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAAATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|254320382|gb|GR826399.1|GR826399
EST:     TCAAATTT-ACTA                         T-GCTACTGAAGAGGTTTTGGTTGATGAAATCACTTA-CCTTCCAAGATCA
genomic: TCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|254320381|gb|GR826398.1|GR826398
EST:     CTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: CTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|7588785|gb|AW704573.1|AW704573
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|298186723|gb|HO037356.1|HO037356
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|192302412|gb|FG997352.1|FG997352
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|151394357|gb|EV264228.1|EV264228
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: gi|21285634|gb|BQ473505.1|BQ473505
EST:     ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA                         TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA