1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagatctctctctctctctctctttctctccctcaatccaatgagttgctaactgttctttattgattttaattagccttttaggtgcttatatctaagagaaatattgtttgttttgtgaatttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATG
species | Glycine max |
transcript | GLYMA04G40030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|298179554|gb|HO028025.1|HO028025
genomic: CTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|192305625|gb|FG994335.1|FG994335
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|58020389|gb|CX707131.1|CX707131
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: TCTCCATCTCCATCAATTTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|151404578|gb|EV274392.1|EV274392
genomic: TCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|26268875|gb|CA819938.1|CA819938
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|151393172|gb|EV263047.1|EV263047
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|193362524|gb|FK325334.1|FK325334
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|9901324|gb|BE610292.1|BE610292
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|298168598|gb|HO009528.1|HO009528
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|192327228|gb|FK019535.1|FK019535
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|298194360|gb|HO041008.1|HO041008
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAAATCAEST: gi|254320382|gb|GR826399.1|GR826399
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: TCAAATTT-ACTA T-GCTACTGAAGAGGTTTTGGTTGATGAAATCACTTA-CCTTCCAAGATCAEST: gi|254320381|gb|GR826398.1|GR826398
genomic: TCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: CTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|7588785|gb|AW704573.1|AW704573
genomic: CTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|298186723|gb|HO037356.1|HO037356
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|192302412|gb|FG997352.1|FG997352
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|151394357|gb|EV264228.1|EV264228
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCAEST: gi|21285634|gb|BQ473505.1|BQ473505
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
EST: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTA TGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
genomic: ACCCCAACTCTTCTTCCAGTCTCCATCTCCATCTCCATCAAATTTAACTAgtaagatctc ... ttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCA
ttttaggtgcttatatctaagagaaatattgtttgttttgtgaatttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATG
atttaat putative branch site (score: 4)
aaatattgtttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatctctctctctctctctctttctctccctcaatccaatgagttgctaactgttctttattgattttaattagccttttaggtgcttatatctaagagaaatattgtttgttttgtgaatttaatttcagTGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTTCCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA