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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAATAGAGAGTTTCGTTCGTCACCATGgtagaagatctattgccattgtttatttttgaagcttcttcttcatctcatcgttggatcatgttgttgtttgtag

Basic information

species Glycine max
transcript GLYMA04G39940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317610|gb|GR826594.1|GR826594
EST:     TCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|4307186|gb|AI444011.1|AI444011
EST:     GTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|38191905|gb|CF921111.1|CF921111
EST:     CTAAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|13791368|gb|BG653959.1|BG653959
EST:     GTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|16348589|gb|BI974184.1|BI974184
EST:     TCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGGAACAAACACGGACGCGGCCACGTC
genomic: TCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|213594186|gb|DB963783.1|DB963783
EST:     AAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|193344833|gb|FK310409.1|FK310409
EST:     AAATAGAGTAGTTTCGTTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AAATAGAG-AGTTTCG-TTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|17022066|gb|BM093100.1|BM093100
EST:     TTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|16348736|gb|BI974331.1|BI974331
EST:     GTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|7147457|gb|AW509379.1|AW509379
EST:     TTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|21889162|gb|BQ742375.1|BQ742375
EST:     GTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|151411660|gb|EV281471.1|EV281471
EST:     AAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|4289414|gb|AI441472.1|AI441472
EST:     CGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|7041796|gb|AW471690.1|AW471690
EST:     TTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|6072231|gb|AW101618.1|AW101618
EST:     TTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|9901209|gb|BE610177.1|BE610177
EST:     TTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|17963317|gb|BM270076.1|BM270076
EST:     GTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|254317611|gb|GR826595.1|GR826595
EST:     TTCGTCA-CATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|193433735|gb|FK399705.1|FK399705
EST:     AAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|15815421|gb|BI787696.1|BI787696
EST:     TTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|151412448|gb|EV282260.1|EV282260
EST:     CTAAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|209725822|gb|BW659938.1|BW659938
EST:     CTAAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|10709737|gb|BF009461.1|BF009461
EST:     TTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|31463666|gb|CD405694.1|CD405694
EST:     GTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|4313736|gb|AI460855.1|AI460855
EST:     TTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|31457848|gb|CD399876.1|CD399876
EST:     GAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|6847660|gb|AW349950.1|AW349950
EST:     GTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGNCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|298175442|gb|HO015075.1|HO015075
EST:     AAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|208324970|gb|GE124868.1|GE124868
EST:     CTAAATAGTAGAGTTTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAAATAG-AGAG-TTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|193363921|gb|FK331701.1|FK331701
EST:     AAATAGAGAGTTTCGTTCGTCACCATG                         ACTTTCAAGCGC
genomic: AAATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGC
EST: gi|31459779|gb|CD401807.1|CD401807
EST:     TTTCGTTCGTCACCATG                         ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: TTTCGTTCGTCACCATGgtagaagatc ... ttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC