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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTTCTTGCAGTGATTACAACTTGTGTTGCTCAGATTgtatccttaaaataatttccaattgcatcaacacctaaattttgtgatagattgaatagagacatatatagtggggacttaattttgaacctgttccact...

Basic information

species Glycine max
transcript GLYMA04G39920.2
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39920.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 6
TTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTTCTTGCAGTGATTACAACTTGTGTTGCTCAGATTgtatccttaaaataattt-ccaattgcatcaacacctaaattttgtgatagattga-atagagacatatatagtggggacttaattttgaacctgttccact
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TATGGGTGTCGGAATTGCAACCGTTACTGATCTGCAGCTCAATGCCCTGGGCTCTATTTTATCTGTCCTCGCAGTTATTACAACATGCATTGCTCAGATTgtatccttaactgaagttgccacctcccttttcacc-atttagtattttctattgagatatgtatccatgttagatcaaaacagtttaaattttaccatat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319936|gb|GR829232.1|GR829232
EST:     GCTCTTTCTTATCTTTTCTTGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: GCTCTTTCTTATCTTTTCTTGCAGTGATTACAACTTGTGTTGCTCAGATTgtatccttaa ... tggcttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG