1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtttgttatggttctgtttttgtcacgtgttcatttgattattgttgactctgagcatctctatgatattccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTTCTTGGGAAGAGATTCAG
species | Glycine max |
transcript | GLYMA04G39920.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCCGTTGGCTTCTATCAA ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATEST: gi|254319936|gb|GR829232.1|GR829232
genomic: TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttgt ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCAT
EST: TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAA ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTT
genomic: TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttgt ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTT
acgtgttcatttgattattgttgactctgagcatctctatgatattccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTTCTTGGGAAGAGATTCAG
tgttgac putative branch site (score: 3)
tattccttttc putative PPT
ttcatttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgttatggttctgtttttgtcacgtgttcatttgattattgttgactctgagcatctctatgatattccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTTCTTGGGAAGAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA