1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgttttaactggccaactttgtgcatcttgagtttttgcattgtcacaaacttgaagtacattctgtcaccctgtttctccttagTGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAGTTGTGAGTTCTAATGTCGGACAAAGACAAATGTCCCCTG
species | Glycine max |
transcript | GLYMA04G39920.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTCGAGAATCAGCAAAAAACTGTCGAAGCTGCATCTCAATCATCCCAG TGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATEST: gi|254319937|gb|GR829233.1|GR829233
genomic: CTCTCGAGAATCAGCAAAAAACTGTCGAAGCTGCATCTCAATCATCCCAGgtttgtttta ... ttctccttagTGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAAT
EST: CTCTCGAGAATCAGCAAAAAACTGTCGAAGCTGCATCTCAATCAT--C-- -----CCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATEST: gi|9440372|gb|BE440878.1|BE440878
genomic: CTCTCGAGAATCAGCAAAAAACTGTCGAAGCTGCATCTCAATCATCCCAGgtttgtttta ... ttctccttagTGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAAT
EST: CTCTCGAGAATCAGCAAAAAACTGTCGAAGCTGCATCTCAATCATCCCAG -GCT---AG--A-GA-A-GATGAATCTGATCCTCTGATGAATGTGGAAAAT
genomic: CTCTCGAGAATCAGCAAAAAACTGTCGAAGCTGCATCTCAATCATCCCAGgtttgtttta ... ttctccttagTGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAAT
agtttttgcattgtcacaaacttgaagtacattctgtcaccctgtttctccttagTGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAGTTGTGAGTTCTAATGTCGGACAAAGACAAATGTCCCCTG
ttctgtcaccctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttaactggccaactttgtgcatcttgagtttttgcattgtcacaaacttgaagtacattctgtcaccctgtttctccttagTGTTTCCAGGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAGTTGTGAGTTCTAATGTCGGACAAAGACAAATGTCCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG