1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAGCTTGGGACTGTGGGTGCGTTGACTCTTTCTGTGGTCTCATCTGTGTCCATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaactcaacttccccctttgaattgtagcaagtttatactcttcttttgctttctatttttgccactcatttgtattttgtgtctttcatttgaatcat...
species | Glycine max |
transcript | GLYMA04G39920.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCG CTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATGEST: gi|8282895|gb|BE020456.1|BE020456
genomic: CATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaactcaac ... tgatatgcagCTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATG
EST: CATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCG CTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATGEST: gi|208330355|gb|GE132244.1|GE132244
genomic: CATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaactcaac ... tgatatgcagCTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATG
EST: AGTTCACTGCATTTCATTTTCG CTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATGEST: gi|213597097|gb|DB968178.1|DB968178
genomic: AGTTCACTGCATTTCATTTTCGgtaactcaac ... tgatatgcagCTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATG
EST: CATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCG CTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATGEST: gi|254319936|gb|GR829232.1|GR829232
genomic: CATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaactcaac ... tgatatgcagCTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATG
EST: GTTCACTGCATTTCATTTTCG CTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATG
genomic: GTTCACTGCATTTCATTTTCGgtaactcaac ... tgatatgcagCTACAACTTTGACCAGCTGGCATCTGCTTGTCACGTTTTGTTCCCTTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTTGGGACTGTGGGTGCGTTGACTCTTTCTGTGGTCTCATCTGTGTCCATTGTGATTTGCAATAAGGCGCTGATGAGTTCACTGCATTTCATTTTCGgtaactcaacttccccctttgaattgtagcaagtttatactcttcttttgctttctatttttgccactcatttgtattttgtgtctttcatttgaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc