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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGCAGAAAGCTGTAATGGGATTCGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttgttatggttctgtttttgtcacgtgttcatttgattattgttgactctgagcatctctatgatattccttttcag

Basic information

species Glycine max
transcript GLYMA04G39920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39920.4 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTAATGGGATTCGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttgttatggttctgtttttgtcacgtgttcatttgattattgttgact--ctgagcatctctatgatattcc-ttttcag-----------------
||| ||    |   |||| |||||||||||  |  | ||||| || || ||||||||| | || ||||| ||||| |||||||||||||| |||||||| |||||  |    |  |||||||| | |   |     | || |   || |||  |  |   ||| |    |  |||||     |||                  
TTTCGATGCAAGGACTGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTTAACTTGAGTCTGGGTTTCAATTCTGTTGGTTTCTATCAGgtatgcatccctt--ttctgtttgtattcagc-caaacttaaggtttattgggtgacctggcaccgacttcttattcggcactcatagcatgacatgttatca

upper sequence: GLYMA04G39920.4 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTAATGGGATTCGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttg---ttatggttctgtttttgtcacgtgttcatttgattat--tgttgactctgagcatctctatgatattccttttcag-------------
||| ||    |   | || |||||||||||  |  | ||||| || || ||||||||| |||| |||||  |||| |||||||||||||| |||||||| |||    |    || |   |||  |||| |   || |||||   |  ||   ||| | |  | |       |     ||| | ||| |             
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatt-tgtattcatccaaacataaggtttattgggtgatctagcactgatttcttattcggcgccaataacatg

upper sequence: GLYMA04G39920.4 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGAGCAGAAAGCTGTAATGGGATTCGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgta----tgtttgttatggttctgtttt--tgtcacgtgttca---tttgattatt-gttgactctgagcatctctatgatattccttttcag----------------------------
 |||||    |||||||| ||||| || || ||| ||||||| ||||| ||||||||  | ||| ||||||| || |||||||||||||| |||||||| |||    |  || || ||  | |    |  | | || ||||||   |||| |  || |     || | |  |||| |     |   || | |                             
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208330355|gb|GE132244.1|GE132244
EST:     TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCCGTTGGCTTCTATCAA                         ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCAT
genomic: TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttgt ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCAT
EST: gi|254319936|gb|GR829232.1|GR829232
EST:     TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAA                         ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTT
genomic: TTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttgt ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTT