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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGACAACTTCGgtaagtgtttctgactttctgctttgaaaaacgattgtgttgttgggtttttacaaatctgtattactaataatagtgaagggagctataatagcttttg...

Basic information

species Glycine max
transcript GLYMA04G39890.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39890.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g02510.t01 (Vitis vinifera), 5'ss of exon 4
TTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGACAACTTCGgtaagtgtttctgactttctgctttgaaaaacgattgtgttg---ttgggtttttacaaatctgtattactaataatagtgaagggagctataatagcttttg
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TAGAGAGTCTCCCAGAACGTGCTTTTGAAGATGTTGCAGATTGGGAGAGGAACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGAGGATACTGgtaagtagttttg-tttgttgtcttttaactcatccaagttgaaaccaatccaagatggagctggaattctggtgctga--gtggttgtcaacacagcttcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306513|gb|FG997211.1|FG997211
EST:     A-CTTGATTCAAGATCGTGCC-GCTCCCT-CGTGGAATT-GACAACTTCG                         -TTTCTACT-ATCTGAG
genomic: AACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGACAACTTCGgtaagtgttt ... tgattgacagGTTTCTACTTATCTGAG