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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATgtgagtccgaaaccctcaccttgtcgttgaatccagaaacaatttccatactacttaatttttcacaagtgttatggttgaacatcatcaacttggtggtgaattggtgatagattggttcacagatttcttaattgagatttcattttttcacaaatgaatgtggcatttttctttggacag

Basic information

species Glycine max
transcript GLYMA04G39890.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39890.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G10940.1 (Arabidopsis thaliana), 5'ss of exon 3
TTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATgtgagtccgaaaccctcaccttgtcgttgaatccagaaacaatttccatactacttaatttttcacaagtgttatggtt-gaacatcatcaacttggtggtgaattggtgatagattggttcacagatttcttaattgagatttcattttttcacaaatgaatgtggcatttttctttggacag
||| || || ||||||||||| |||||||||||  | || ||| | ||||||||||||| |||  | ||||||||| |||  ||||| |||||||||||||| |||   | |  |||||  |    || ||||||  ||  | || ||||||  ||  ||     |   |  | || || |||||                                                                                                   
TTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGGGAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATgtaagtttaatagtctcactctac--ttcaatccaagaa--agtttcatacttttt--ttgcgttctgattctgtgtttcgaacag--------------------------------------------------------------------------------------------------

upper sequence: GLYMA04G39890.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g02510.t01 (Vitis vinifera), 5'ss of exon 3
TTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATgtgagtccgaaaccctcaccttgtcgttgaatcca-gaaacaatttccatactacttaatttttcacaagtgttatggttgaacatcatcaacttggtggtgaattggtgatagattggttcacagatttcttaattgagatttcattttttcacaaatgaatgtggcatttttctttggacag
 || |||||||||||||  || ||||| |||||||| || ||| | || || || ||||| || |||||||||||  ||||||||||||||| |||| ||||||||    | ||||| | | ||   |   |||  |   ||| |    || | |  | | ||  | |   ||| | ||  |  ||         || || |||||                                                                              
CTCAGAGGGAAAAGGAAAGGTATATGTACATTGTACAGCCGGATTGGGGAGGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATgtgagtgtcta-ccctctcatagttaattcttccttgcctcaaatcatgtattgc--agtattcaaaatcagttgtagtaaataat---------gggggagaattttaagc------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306513|gb|FG997211.1|FG997211
EST:     GAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAAT                         CTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAAT
genomic: GAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATgtgagtccga ... ctttggacagCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAAT