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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttctatagtctatacatagcaatcaaatgaatgttttttaaccaagttggatgagagttcatctccctcttcattttcatatttcagGTACTAAGTTATCTTTCATTAAATGAGGGAGATGAAATTTCATGGGCGCTAATCCAGAGAGTATTGGCTTCTGTTGCTCAAACAGCAATAATACCTATGC

Basic information

species Glycine max
transcript GLYMA04G39730.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531715|gb|EH259848.1|EH259848
EST:     ATTGGAGGTTGGTGGGAAGCTTTGAACCAAGAAGAGAAATCCAAT                         GTACTAAGTTATCTTTCATTAAATGAGGGAGATGAAATTTCATGGGCGCTA
genomic: ATTGGAGGTTGGTGGGAAGCTTTGAACCAAGAAGAGAAATCCAATgtgggttcta ... catatttcagGTACTAAGTTATCTTTCATTAAATGAGGGAGATGAAATTTCATGGGCGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttaaccaagttggatgagagttcatctccctcttcattttcatatttcagGTACTAAGTTATCTTTCATTAAATGAGGGAGATGAAATTTCATGGGCGCTAATCCAGAGAGTATTGGCTTCTGTTGCTCAAACAGCAATAATACCTATGC
   ttttaac  putative branch site (score: 2)
                         ttcatctccctcttca  putative PPT
                                     ttcattttcatattt  TA-rich tract