Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgattaattgcaaattttgtttaccatccttcagtatcgtactctaagtaacttgatgagtgcccgaatactttcatatctatttcaccttgtcagGGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA

Basic information

species Glycine max
transcript GLYMA04G39730.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39730.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 12
------------------gtaat-gattaattgcaaattttgt---ttaccatccttcagtatcgtactctaagtaacttgatgagtgcccgaatactttcata---tctatttcaccttgtcagGGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA
                  | ||| |||  | | |   | || |   |    |  ||| || |   ||  ||  | |        ||||    | |    ||||    |||||||        |||| |||||  ||| |||  ||||||| |||||||| ||||||||||||   ||| ||||||| ||||| |||||||||||||||||||||
gtaataatttaatttctggaaatagatgtacttctgttcttttaaatagttagtctttaggaagttagcctt-gcagtcaacgaagtgtaacattttagtcatgctctctattttcttggtccagGTTTTGGGAGTGATGCAGATAACCCACATTTGCCTCATAATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531715|gb|EH259848.1|EH259848
EST:     CCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTG                         GGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCA
genomic: CCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTGgtaatgatta ... accttgtcagGGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCA
EST: gi|16284567|gb|BI946157.1|BI946157
EST:     CCAACTAAGAAGATCCATTGGAGCACCTGTAATGGCTGTTCTCCAGTTTG                         GGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCA
genomic: CCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTGgtaatgatta ... accttgtcagGGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCA
EST: gi|51343690|gb|CO984423.1|CO984423
EST:     CCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTG                         GGTTTGGAGGTGGTGCT
genomic: CCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTGgtaatgatta ... accttgtcagGGTTTGGAGGTGGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctaagtaacttgatgagtgcccgaatactttcatatctatttcaccttgtcagGGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA
                                         tttcacctt  CT-rich tract
                              tttcatatctattt  TA-rich tract