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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACAgtaagaatttcttcttccatacatctgccaatgttgcatatttatcttcttagaaaggacctgggtatgctctgcagaaatcagtcaaagtttgtgatag...

Basic information

species Glycine max
transcript GLYMA04G39730.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39730.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0031g01540.t01 (Vitis vinifera), 5'ss of exon 13
GGTTTGGAGGTGGTGCTAATAACCCTCATTTGCCCCATAATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACAgtaagaatttcttcttccatacatctgccaatgttgcatatttatcttcttagaaaggacctgggtatgctctgcagaaatcagtcaaagtttgtgatag------
| |||||  ||| |||  ||||||| |||||||| ||||||||||||   ||| ||||||| ||||| ||||||||||||||||||||||||| ||| |||  | |||||   || |      |   |||||    |   |   ||   ||  ||      ||  || |  | |   |  || |  |        
GTTTTGGGAGTGATGCAGATAACCCACATTTGCCTCATAATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACAgtaaaaatctctattgccataagacttc------tttttatttgctgtagaaatgagcttctctgttcttaatgtggagagtaatgggaaattatagtgttatgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531715|gb|EH259848.1|EH259848
EST:     ATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA                         ATTGGAGGTTGGTGGGAAGCTTTGAACCAAGAAGAGAAATCCAAT
genomic: ATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACAgtaagaattt ... tctgctacagATTGGAGGTTGGTGGGAAGCTTTGAACCAAGAAGAGAAATCCAAT
EST: gi|16284567|gb|BI946157.1|BI946157
EST:     ATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA                         ATTGGAGGTTGGTGGGAAGCTTTGAACCAAGAAGAGA
genomic: ATCACGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACAgtaagaattt ... tctgctacagATTGGAGGTTGGTGGGAAGCTTTGAACCAAGAAGAGA