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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgatttttcttccatgacattttttcttttgcaaaatataagacagtaactattaagaatcttggaaatttggaggaactgatcttagcatcaaaaatatttttcttttccagtaaataattttaccctttggaattcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAAACGCCAATGTGAAGGTCTCCTTGGAAAGTATGTCTGCAAATGTTATTT

Basic information

species Glycine max
transcript GLYMA04G39700.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46492802|gb|CN472358.1|CN472358
EST:     CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAG                         ACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
genomic: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
EST: gi|31306053|gb|CD391256.1|CD391256
EST:     CATACACAAAG                         ACTATCACGCATTGGTCTTCCCTTGTTGAAGAAAGAAGTGAAGCATATGCA
genomic: CATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
EST: gi|151411551|gb|EV281362.1|EV281362
EST:     CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAG                         ACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
genomic: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaatatttttcttttccagtaaataattttaccctttggaattcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAAACGCCAATGTGAAGGTCTCCTTGGAAAGTATGTCTGCAAATGTTATTT
                                            ttcacct  CT-rich tract
     atatttttcttttcca  TA-rich tract