1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatagcacaatgccctttgtcacttttaattgatttaagctctttcactgcaaagatgccccttcagttatagtacaccatctggacatgataacctgagcttagttgttttttgtgtgagcatctcttaacattgtctgagaatctacgtgccattattcattatcttactcgaatcaataaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTTGTTG
species | Glycine max |
transcript | GLYMA04G39700.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAG ATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTTEST: gi|192317398|gb|FK008934.1|FK008934
genomic: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAGgtatatagca ... aaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTT
EST: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAG ATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTTEST: gi|298199157|gb|HO042520.1|HO042520
genomic: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAGgtatatagca ... aaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTT
EST: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAG ATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTTEST: gi|151411551|gb|EV281362.1|EV281362
genomic: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAGgtatatagca ... aaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTT
EST: TGGAATATGGAAGCTCTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAG ATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTT
genomic: TGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGATTTTGAAGgtatatagca ... aaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTT
tctgagaatctacgtgccattattcattatcttactcgaatcaataaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTTGTTG
atcttac putative branch site (score: 3)
attattcattatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatagcacaatgccctttgtcacttttaattgatttaagctctttcactgcaaagatgccccttcagttatagtacaccatctggacatgataacctgagcttagttgttttttgtgtgagcatctcttaacattgtctgagaatctacgtgccattattcattatcttactcgaatcaataaaactgcagATTAAATCACAAGAGATCGAACCATACTTAAGTGGACGCTGTATATATCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA