1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTTTTGTTTCGTCTAAGTTGCAGAGTGCAAAACCTTCGGCGAATATACGGCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAGgttgttgtaaaaaccatgcatactttgacaatttgcaaacaatgattgttttctttttttatttccttgagttttcatacctacgtacgtatatatatct...
species | Glycine max |
transcript | GLYMA04G39700.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAG CTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGAEST: gi|192317398|gb|FK008934.1|FK008934
genomic: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAGgttgttgtaa ... actcatgtagCTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGA
EST: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAG CTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGAEST: gi|298199157|gb|HO042520.1|HO042520
genomic: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAGgttgttgtaa ... actcatgtagCTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGA
EST: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAG CTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGAEST: gi|151411551|gb|EV281362.1|EV281362
genomic: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAGgttgttgtaa ... actcatgtagCTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGA
EST: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAG CTTCAGCATTGGAATATGGAAGCTCTCATTCTTCTGTTGAAGAAAAGTTGA
genomic: GCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAGgttgttgtaa ... actcatgtagCTTCAGCATTGGAATATGGAAGCTTTCATTCTTCTGTTGAAGAAAAGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTTGTTTCGTCTAAGTTGCAGAGTGCAAAACCTTCGGCGAATATACGGCGAAGGACAGCATCTTTGGTGGTTGCATGTTCGCATAATAATATTCCAGgttgttgtaaaaaccatgcatactttgacaatttgcaaacaatgattgttttctttttttatttccttgagttttcatacctacgtacgtatatatatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG