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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattgtacttaatttactttatttttggcttcatcctctttttgtgttgtgtttctacttttattcttctccctcattgttgagcatgccacctactaatcgaaatatgttgttgcttaccag

Basic information

species Glycine max
transcript GLYMA04G39690.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G158021_T01 (Zea mays), 5'ss of exon 9
TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattgtacttaatttactttatttttggcttcatcctct--ttttgtgttgtgtttctacttttattcttctccctcattgttgagcatgccacctactaatcgaaatatgttgttgcttaccag
 ||| |||| |||||||| ||||  ||||| |||||||| ||||||||||||||    |||  ||     | |  |||  ||      || || ||   |  |||||  ||| ||     |  | |  |      | ||  ||                                       
CGCTCTGGTATGGGGTTCCAGTGTGAAACATAAGCCTCAGAGAGTTGGCAAGgtatgcattagaccagcatgatgttacattgttacacacccactgggtgggtgttaggttccttgcactgatttattgtgctttcgtgcag---------------------------------------

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G39520.1 (Arabidopsis thaliana), 5'ss of exon 9
TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattgtacttaatttactttatttttggcttcatcctctttttgtgttgtgtttctacttttattcttctccctcattgttgagcatgccacctactaatcgaaatatgttgttgcttaccag
 ||| |||| |||||||||||||| ||||||||||| ||||||||||| ||||||  |  |      || | |    |   ||    |  |       |  ||   | |  ||   |  |     ||    |  | | || |||   |  |  || |  |                    
CGCTCTGGTTTGGGGTTCAAGTGCCAAACACAAGCCACAAAGAGTTGGAAAGgttagttcttctagcaaatcaaacaaaagttaatctggtaaatcgatattgcaatatccctgact--aactaactattgctgtctcga-catcgtattttatacttcag-------------------

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 9
TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattgtacttaatttactttatttttggcttcatcctctttttgtgttgtgtttctacttttattcttctccctcattgttgagcatgccacctactaatcgaaatatgttgttgcttaccag
||| || |||||||| ||||| |  ||||||||||| ||||||||||||| |||||||  | |    ||   ||| |||  |   ||||||    |||   | |||| | |||   ||||   ||    |   |||   | ||                                     
TGCATTAGTCTGGGGATCAAGCGTGAAACACAAGCCCCAAAGAGTTGGCAGGgttgattctatg---aaccgactctataataatcttcatttcgttt---tattgtatctcttaatttacatttggtgccttttgcaaaccag------------------------------------

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S26_115V6.1 (Physcomitrella patens), 5'ss of exon 9
TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattgtacttaatttactttatttt-tggcttcatcctctttttgtgttgtgtttctacttttattcttctccctcat-tgttgagcatgccacctactaatcgaaatatgttgttgcttaccag
||||||||| ||||||||||| |||||||||||||| || ||||| || ||||| || |||   || || |   |   || | | |  | |    || |   | | |  | |||| |   |  ||| | | |  | |||  ||| |  |   | |                           
TGCTTTGGTGTGGGGTTCAAGCGCAAAACACAAGCCACAGAGAGTGGGAAAGgt-gagatt---ctcaagtctttgcgttgtatagtatgaattgctgtccttatggaatgtctagtccaagacttttgcatgttctgtccagcctatcgtatcca--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532810|gb|EH260943.1|EH260943
EST:     AAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: AAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|193543326|gb|FK502505.1|FK502505
EST:     GCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: GCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|14991431|gb|BI317104.1|BI317104
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|58024862|gb|CX711603.1|CX711603
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|58023958|gb|CX710699.1|CX710699
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|22933763|gb|BU550902.1|BU550902
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|15816018|gb|BI788293.1|BI788293
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|151407189|gb|EV277004.1|EV277004
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|16345802|gb|BI971397.1|BI971397
EST:     CAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|14008785|gb|BG725389.1|BG725389
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|8284564|gb|BE022132.1|BE022132
EST:     GCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: GCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
EST: gi|57575753|gb|CX548728.1|CX548728
EST:     CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAG                         GAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
genomic: CTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGgttgatattg ... tgcttaccagGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA