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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggcctatcatttatttcttttctgtgtttgggtcctttttgaaagtgaatttgatttaatgtagtcagaggaagtgcaaccttt...

Basic information

species Glycine max
transcript GLYMA04G39690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G39520.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtatt-ccaggcctatca---tttatttctttt-ctgtgtttgggtcctttttgaaagtgaatttgatttaatgtagtcagaggaagtgcaaccttt
|||||| ||||||||||| ||||| |||||||| || || || || ||||| ||||| |||||||| ||| |||| ||| |||| ||||||||||| ||||| || || |||    | |  |||     ||  ||||| ||  |||  ||||     ||||||||   |    |  |  |||   ||  |      |  || |  
TGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGGATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagttatcgttacgaatattgaacttcctttctcttgttgtaattggaa---ttttgaaacctaccacgtatccatggcatcctatttctagttactt--

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 3
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggcctatcatttatttcttttctgtg-tttgggtcctttttgaaagtgaatttgatttaatgtagtcagaggaagtgcaaccttt
|||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || || || |||||||| || || || || ||||||||||| || |    |||||    | | |||||| | | ||  |   |||      | | ||| | |   ||| || |  |  ||                    
TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatctttcca---ttgtgatttatatatcttaaggaatttttaagttgtctgatattt--ttttatgttttacag--------------------

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S26_115V6.1 (Physcomitrella patens), 5'ss of exon 3
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggcctatcatttatttcttttctgtgtttgggtcctttttgaaagtgaatt--tgatttaatgtagtcagaggaagtgcaaccttt---
|||||| ||||||||||| |||||| ||||||| ||||| || || || || |||||||||||||| || || || ||| | || || || ||||||||||| ||  |  | |||       | |  | | |     |  | ||||| ||| || ||  |  | ||   ||| ||     ||||   |     || || |     
TGATGTCACTAAAAGTGGAGATTCACGAGTTGGGCTTGTTGGTTTTCCATCTGTTGGCAAATCTACCCTTCTCAACAAGCTCACAGGAACCTTTTCTGAGgtttgccgtcaatcc---tacttgagctgtcttggcacaat-tttggttccgttatgttaccgtatcactgacttgg-acagtccctgttccagcgacatggatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920656|gb|EH039949.1|EH039949
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|19269399|gb|BM885655.1|BM885655
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|16996121|gb|BM085493.1|BM085493
EST:     GCAAAACTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: GCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|18040270|gb|BM308564.1|BM308564
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTT-ACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|7041848|gb|AW471742.1|AW471742
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|151412834|gb|EV282646.1|EV282646
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|254315459|gb|GR825268.1|GR825268
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|11413788|gb|BF425799.1|BF425799
EST:     CAGTTGGCAAATCTACTCTTCTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGGTTACTACCTTAACTTGCATCCCAAGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|151406659|gb|EV276474.1|EV276474
EST:     CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA