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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGATTATGAAGACCCTGTAATATTATCCTCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcacttctcttaaaacatatctttagctttattgcttgataatgttagtgatttctccattgtgcgttaatgaggagcaatgaatatgaagattaa...

Basic information

species Glycine max
transcript GLYMA04G39690.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g43470.1 (Oryza sativa), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCCTCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcacttctcttaaaacatatctttagctttattgcttgataatgttagtgatttctccattgtgcgttaatgaggagcaatgaatatgaagattaa
| || |||||||| |||||||||||  |||||||||||||||  ||||| || ||||||||| |  | || |||||||||||| | ||||| ||||| ||||||| |  |   ||      ||||||  |  | | |  ||  |  |    || ||   ||  | ||| | |||       |||  ||  || ||     
ACCCAGATTATGAGGACCCTGTAATCGTATCCTCTAAGAAGAAAACAGTGGAAGACTTCTGCAACAGAATCCACAAGGACATGGTGAAACAATTTAAATAgtgagtatcttcatt----tgtatctt--gtctgaatattt--ttgtccctgttatccatctgt-gtg-gctaactgctcacaa--aacctgcag-----

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G39520.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCCTCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcacttctcttaaaacatatctttagctttattgcttgataatgttagtgatttctccattgtgcgttaatgaggagcaatgaatatgaagattaa-
|||| |||||||| || || ||||| ||||| || |||||||| ||||| ||||||||||||   || |||||||| |||||||||||||| || ||||||| || | ||    |     | || |||   ||   || |  ||  |  | |         ||| |  | | |||    | | |   || |   |||  | 
ATCCGGATTATGATGATCCCGTAATCTTATCATCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAAACAATTCAAGTAgtaagtaattaaaatccttaacatttttcttttctctgttatatggttcttgct-caaaagcatcgctcatgaatacttaactaatgatctcctgatacag

upper sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCCTCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcacttctcttaaaac----atat-ctttag---ctttattgcttgataatgttagtgatttctccattgtgcgttaatgaggagcaatgaatatgaagattaa
|||| ||||||||||| |||||||| ||||| || || | ||||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||| ||  ||  |    || |    || | || |||    || ||| ||||| ||| ||      | || ||   |    |||  |  |  ||  || ||         
ATCCCGATTATGAAGATCCTGTAATTTTATCATCCAAAAGGAGGACAGTTGAGGACTTCTGCAGCAGAATCCACAAGGACATGCTCAAACAATTTAAGTAgtaagtgctctttcctaatcttccatgtactctagaattttgatttcttgagaatttttaaagctccttcaccatcatctaagaacaaaaaaaaaaaatt--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305461|gb|FG994283.1|FG994283
EST:     AAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: AAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|14991431|gb|BI317104.1|BI317104
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|58024862|gb|CX711603.1|CX711603
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|58023958|gb|CX710699.1|CX710699
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|22933763|gb|BU550902.1|BU550902
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|15816018|gb|BI788293.1|BI788293
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|151407189|gb|EV277004.1|EV277004
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|14008785|gb|BG725389.1|BG725389
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
EST: gi|57575753|gb|CX548728.1|CX548728
EST:     GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTA                         TGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagcactt ... aatgatgcagTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAA