1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGGCTGGCCTTTTGCAAATTCATGGTAAAGCCATCAACTATGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctcacttttgtcatatgcttttctatataaaataaaaagcttgttgtcacctttcagcctgctgatttctgattcttctcccag
species | Glycine max |
transcript | GLYMA04G39670.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|192312580|gb|FK003274.1|FK003274
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|214008253|gb|DB989795.1|DB989795
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATATCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|16342504|gb|BI968099.1|BI968099
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|209702699|gb|BW675674.1|BW675674
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|213591107|gb|DB979354.1|DB979354
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: GGATGAACCAACCAATCACAGT-GATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|254327297|gb|GR836906.1|GR836906
genomic: GGATGAACCAACCAATCAC-TTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|151402499|gb|EV272312.1|EV272312
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGA-CCA-CCAATCACTTGGATATACCTTCTAA-GAAATGCTCGAG -AAGCA-TAA-TGA-TACCAGG-CACTGTTATCACAGTATCTCATGACCGAEST: gi|209725966|gb|BW669740.1|BW669740
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: AAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|22524815|gb|BU083626.1|BU083626
genomic: AAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGAEST: gi|193556422|gb|FK511071.1|FK511071
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAEST: gi|209699162|gb|BW656175.1|BW656175
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCA
EST: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAG GAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
genomic: TGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctca ... cttctcccagGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCTGGCCTTTTGCAAATTCATGGTAAAGCCATCAACTATGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGgtttgtctcacttttgtcatatgcttttctatataaaataaaaagcttgttgtcacctttcagcctgctgatttctgattcttctcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA