1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagttagcatgatcttattattgaaaacctgatcattaaaataccttactgtctgtatgtcatcgttatatgatatcaactgatcatgttttactgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTA
species | Glycine max |
transcript | GLYMA04G39670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAG ACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCEST: gi|151403285|gb|EV273095.1|EV273095
genomic: GAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAGgtgagttagc ... actgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCC
EST: GAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAG ACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCEST: gi|151402499|gb|EV272312.1|EV272312
genomic: GAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAGgtgagttagc ... actgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCC
EST: GAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAG ACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCC
genomic: GAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAGgtgagttagc ... actgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCC
actgtctgtatgtcatcgttatatgatatcaactgatcatgttttactgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTA
aactgat putative branch site (score: 3)
ttttact putative PPT
ttatatgatatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttagcatgatcttattattgaaaacctgatcattaaaataccttactgtctgtatgtcatcgttatatgatatcaactgatcatgttttactgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA