1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttttgcacattttctattttacatttttaacatatctgctcaatttcatgtggaaatctaattatttataaagtttttgcaccctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAAACTGATGGGAACATGATAACTATACCAGGATTTGAAGTGTTCACGATC
species | Glycine max |
transcript | GLYMA04G39350.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAG TGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAEST: gi|151407742|gb|EV277557.1|EV277557
genomic: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAGgttttgcaca ... cctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAA
EST: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAG TGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAEST: gi|23732803|gb|BU764575.1|BU764575
genomic: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAGgttttgcaca ... cctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAA
EST: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAG TGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAEST: gi|18709598|gb|BM522446.1|BM522446
genomic: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAGgttttgcaca ... cctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAA
EST: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAG TGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAA
genomic: GGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTACGCTTAAATCCAGgttttgcaca ... cctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAA
gctcaatttcatgtggaaatctaattatttataaagtttttgcaccctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAAACTGATGGGAACATGATAACTATACCAGGATTTGAAGTGTTCACGATC
atctaat putative branch site (score: 3)
ccctatc putative PPT
tggaaatctaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgcacattttctattttacatttttaacatatctgctcaatttcatgtggaaatctaattatttataaagtttttgcaccctatcacagTGGAGCGCCTCTCCTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAAACTGATGGGAACATGATAACTATACCAGGATTTGAAGTGTTCACGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG