1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAGACATGTGGAGTGTTGGGGCCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccataactttgaactgctaatattaaaaaaaatgtctgtctgtgatcaatgctaatgaaaaatgctgatttcag
species | Glycine max |
transcript | GLYMA04G39350.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAG GTGTTGAGAAACATCAGATCCTGCTCTTGTCTTCCATTTTCTCAACTGATTEST: gi|151407742|gb|EV277557.1|EV277557
genomic: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccat ... ctgatttcagGTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATT
EST: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAG GTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATTEST: gi|23732803|gb|BU764575.1|BU764575
genomic: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccat ... ctgatttcagGTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATT
EST: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAG GTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATTEST: gi|18709598|gb|BM522446.1|BM522446
genomic: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccat ... ctgatttcagGTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATT
EST: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAG GTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATT
genomic: TTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccat ... ctgatttcagGTGTTGAGAAACATCAGATCCTGCACCTGTCTTCCATTTTCTCAACTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGACATGTGGAGTGTTGGGGCCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccataactttgaactgctaatattaaaaaaaatgtctgtctgtgatcaatgctaatgaaaaatgctgatttcag
- - - - - - - - - - - - - - - - GAGCTT