1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttatgaacaaactgtcttcgttgtcagaataaaaaaaaaggattaaaaacaccattgtacaagctaagaattttattttttttttgttttctttctcagTGAAGATGCTGACAAACTCAGAATCCACACAATCTCTGAAGCTGGCAGCCTAGATGCACTTGAGAAGATGGTTGATAGTTCAGATTCAGAGGATGCTAGC
species | Glycine max |
transcript | GLYMA0048S00270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTCAAGAGATAGCTCCTTAGTTGTCAAGGAAATCTTCGGTGTTACAGA TGAAGATGCTGACAAACTCA-AATCCACACAATCTCTGAAGCTGGCAGCCTEST: gi|192302555|gb|FG994849.1|FG994849
genomic: TGTTCAAGAGATAGCTCCTTAGTTGTCAAGGAAATCTTCGGTGTTACAGAgtatgttcta ... tctttctcagTGAAGATGCTGACAAACTCAGAATCCACACAATCTCTGAAGCTGGCAGCCT
EST: TGTTCAAGAGATAGCTCCTTAGTTGTCAAGGAAATTTTCGGTGTTACAGA TGAAGATGCTGACAAACTCAGAATCCACACAATTTCTGAAGCTGGCAGCCT
genomic: TGTTCAAGAGATAGCTCCTTAGTTGTCAAGGAAATCTTCGGTGTTACAGAgtatgttcta ... tctttctcagTGAAGATGCTGACAAACTCAGAATCCACACAATCTCTGAAGCTGGCAGCCT
aaaaacaccattgtacaagctaagaattttattttttttttgttttctttctcagTGAAGATGCTGACAAACTCAGAATCCACACAATCTCTGAAGCTGGCAGCCTAGATGCACTTGAGAAGATGGTTGATAGTTCAGATTCAGAGGATGCTAGC
ttttattttttttttg CT-rich tract
aagctaagaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatgaacaaactgtcttcgttgtcagaataaaaaaaaaggattaaaaacaccattgtacaagctaagaattttattttttttttgttttctttctcagTGAAGATGCTGACAAACTCAGAATCCACACAATCTCTGAAGCTGGCAGCCTAGATGCACTTGAGAAGATGGTTGATAGTTCAGATTCAGAGGATGCTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- tatgaac
- - - - - - ctgtctt
- - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -acaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacaagc