1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgtccctcattcattattccaacaatttatgttatcaaaactttgttgactttctctaaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAAGGAAGAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAG
species | Glycine max |
transcript | GLYMA0048S00270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAG GTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAAEST: gi|23728297|gb|BU762197.1|BU762197
genomic: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAGgtctgtccct ... aaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAA
EST: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAG GTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAAEST: gi|192302554|gb|FG994848.1|FG994848
genomic: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAGgtctgtccct ... aaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAA
EST: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAG GTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAAEST: gi|7924876|gb|AW830902.1|AW830902
genomic: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAGgtctgtccct ... aaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAA
EST: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAG GTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATG
genomic: TCAAGACCGTCAGGAAATTCTCTTCTCCCAAAGCAAAACGCCGCAGACAGgtctgtccct ... aaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATG
attattccaacaatttatgttatcaaaactttgttgactttctctaaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAAGGAAGAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAG
ctctaaa putative branch site (score: 3)
ctttctcta CT-rich tract
aatttatgttatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtccctcattcattattccaacaatttatgttatcaaaactttgttgactttctctaaatttccagGTCAGTAAAAATGCGACGCTATGCAAGTCGCTGGATGATTTATTTCAAAAAGGAAGAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA