1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatctcatggagaaaacagtttcagtttgctggctttgatacttttgtgtgcttgtgcatttgtgtcatatgatcttaccaactgtatattcatattcagACAGGTTTTGATTTGGAAGAAATATTGCGCAAGTATATCAGGTATGCTCTGAATGAGAAACCATTCAATCCTGACATGGTAGCTGATTTAATCCAGCTAA
species | Glycine max |
transcript | GLYMA0048S00270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAG ACAGGTTTTGATTTGGAAGAAATATTGCGCAAGTATAEST: gi|192302554|gb|FG994848.1|FG994848
genomic: AAGGAAGAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAGgtgaggtgca ... tcatattcagACAGGTTTTGATTTGGAAGAAATATTGCGCAAGTATA
EST: AAGGA-GAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAG ACAG-TTTTGATTTGGAAGAA-TATTGCGCAAGTATATCACGTATGCTCTG
genomic: AAGGAAGAGATGAAGTTAAGCTTGATGCTCTCAAGCAAATTGAGAATAAGgtgaggtgca ... tcatattcagACAGGTTTTGATTTGGAAGAAATATTGCGCAAGTATATCAGGTATGCTCTG
tgtgtgcttgtgcatttgtgtcatatgatcttaccaactgtatattcatattcagACAGGTTTTGATTTGGAAGAAATATTGCGCAAGTATATCAGGTATGCTCTGAATGAGAAACCATTCAATCCTGACATGGTAGCTGATTTAATCCAGCTAA
atcttac putative branch site (score: 3)
tgtatattcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctcatggagaaaacagtttcagtttgctggctttgatacttttgtgtgcttgtgcatttgtgtcatatgatcttaccaactgtatattcatattcagACAGGTTTTGATTTGGAAGAAATATTGCGCAAGTATATCAGGTATGCTCTGAATGAGAAACCATTCAATCCTGACATGGTAGCTGATTTAATCCAGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -ctcatgg
- - - - - agaaaaca
- - - - - - - - - - - - - -tgctggc
- - - - - - - - - - - - - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaact