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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAAACCGTGAACTGGTAATTCCCGTTGGCCTCTTTGTTGGCTGTCTTGCGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttgaatttgttgtgtatttcatcaacagttccattctcagttgatttgttcctatgtttattatagtctattaatgaacttgcttttgctgtgtccacag

Basic information

species Glycine max
transcript GLYMA0041S00300.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022398|gb|CX709139.1|CX709139
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|120529649|gb|EH257783.1|EH257783
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|192308860|gb|FK002084.1|FK002084
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|120529695|gb|EH257829.1|EH257829
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|58022195|gb|CX708936.1|CX708936
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|192308859|gb|FK002083.1|FK002083
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|51337361|gb|CO981227.1|CO981227
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|15204659|gb|BI427427.1|BI427427
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT
EST: gi|192304316|gb|FG993572.1|FG993572
EST:     CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAG                         GAAAAGGATTTGAAACGGCATCTTCTGGGCGTGTATTGCCTTTTTGTGTTT
genomic: CGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttg ... gtgtccacagGAAAAGGATTTGAAACGGCATCTTCTGGGCATGTATTGCCTTTTTGTGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAAACCGTGAACTGGTAATTCCCGTTGGCCTCTTTGTTGGCTGTCTTGCGGCTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAAATCTGAGgtataatttgaatttgttgtgtatttcatcaacagttccattctcagttgatttgttcctatgtttattatagtctattaatgaacttgcttttgctgtgtccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT