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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGCACTGCACTGAATTGGATTGGGTTTGCAGCAGAAGCAGCGAAGGATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGgtatgtttttattctattccttcttttcaactaaaacatcgtctcatgagtaaattacgttaaattatgtctgaaatatcaatcattattcaaattcagc...

Basic information

species Glycine max
transcript GLYMA0041S00300.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529649|gb|EH257783.1|EH257783
EST:     ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGGTAAAG                    
genomic: ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTC--G----Ggtatgttttt ... ggagg
EST: gi|193556769|gb|FK516066.1|FK516066
EST:     ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGG                         CTGTTTCAATGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTT
genomic: ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGgtatgttttt ... ggaggtaaagCTGTTTCAATGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTT
EST: gi|120529695|gb|EH257829.1|EH257829
EST:     ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGGTAAAG                    
genomic: ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTC--G----Ggtatgttttt ... ggagg
EST: gi|7283895|gb|AW596497.1|AW596497
EST:     ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGGTAAAG                    
genomic: ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTC--G----Ggtatgttttt ... ggagg
EST: gi|192308859|gb|FK002083.1|FK002083
EST:     ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGGTAAAG                    
genomic: ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTC--G----Ggtatgttttt ... ggagg
EST: gi|192304316|gb|FG993572.1|FG993572
EST:     ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGG                         CTGTTTCAATGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTT
genomic: ATATGGCGATTCTTCCTTCTCTTGCAGTTCCTTCAACTCCCATTTCTCGGgtatgttttt ... ggaggtaaagCTGTTTCAATGCCAACCCTGTCAATTCCATAGATGCACAGAACTATATCTT