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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATTGTGGTGCTGAGAAATCTTCTAAGCCCTTTGTCTGACCTGAATGATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttagcttttcgccttttcctattatctgacataacttctaatttaagatggagcagaacttcactgaactcattaaagcttataaagctaatgtaattcttttaatttgcag

Basic information

species Glycine max
transcript GLYMA0041S00260.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00260.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g08550.t01 (Vitis vinifera), 5'ss of exon 6
TGATATTGTGGTGCTGAGAAATCTTCTAAGCCCTTTGTCTGACCTGAATGATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaa--tgttagcttttcgccttt-----tcctattatc-tgacataacttctaatttaagatggagcagaact----tcactgaactcatta-----aagcttataaagctaatgtaattcttttaatttgcag-------------------------------------------------------
||||||||| |||||  || ||||||| || ||| ||  ||| |||||||||||| | ||||| || ||||| || || || |||||||||||||| |||||||  | | ||  ||    | ||     |  | ||| | | |   ||     |       |||||  |   ||     || |  |  ||| |     || ||  |||  | | |   |   || |   |||||                                                        
TGATATTGTTGTGCTCCGAGATCTTCTCAGGCCTCTGCATGATCTGAATGATGCAGCTACACTTTGCAAATATCTCGAGTCCTTTTATACCTTGCGAAAGgtaagttctaagacttgtatccttagagctgttgttaccataatgcaaggaaaagaaatccatggaaaatttctgttgccatttgatccataactaaaaaactcctaacac-actaagagcattcttcattgcaaagattttatttttaaaatttttgtcatttattgtttccaaaccttttggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815676|gb|BI787951.1|BI787951
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|18038806|gb|BM307100.1|BM307100
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|31305155|gb|CD390358.1|CD390358
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|10236348|gb|BE805236.1|BE805236
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|15815016|gb|BI787291.1|BI787291
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|7588053|gb|AW703857.1|AW703857
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|13563482|gb|BG551702.1|BG551702
EST:     ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: gi|31561206|gb|CD487044.1|CD487044
EST:     ACCCACACTCTGTAAATACCTNNTGAATCATTTTATANNCCTTGCGTAAG                         CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ACCCACACTCTGTAAATACCT--TGAATCATTTTATA--CCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT