1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaccccatttatgctccaagttctataagtattttaaccctggcgagtgattaacctttcattcagtgtagaatcgcattcacattttattggtctcttagataataatgaagtggcaaattattgcagATCCCCCCCCAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACAC
species | Glycine max |
transcript | GLYMA0041S00260.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATCAAACGGTGAAATGGAAAAGTATTTGAAGACAATGGTGGCTCCACAG ATNNNNNNNNAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAACEST: gi|15815016|gb|BI787291.1|BI787291
genomic: TATCAAACGGTGAAATGGAAAAGTATTTGAAGACAATGGTGGCTCCACAGgtaccccatt ... attattgcagATCCCCCCCCAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAAC
EST: TTGAAGACAATGGTGGCTCCACAG ATNNNNNNNNAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAAC
genomic: TTGAAGACAATGGTGGCTCCACAGgtaccccatt ... attattgcagATCCCCCCCCAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAAC
cgcattcacattttattggtctcttagataataatgaagtggcaaattattgcagATCCCCCCCCAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACAC
ttagataataatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccccatttatgctccaagttctataagtattttaaccctggcgagtgattaacctttcattcagtgtagaatcgcattcacattttattggtctcttagataataatgaagtggcaaattattgcagATCCCCCCCCAGCTTTATGATGCCTTCATTGCTGCTGTTGACAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT