Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGGAGAATGTAGATCAGAGAAACACCACGGCGACGCTGACGTCATCATTGTCGGAGCCGGCGTCGCCGGCGCCTCTCTGGCGCACACTCTCGGCAAGgtaggtttgatttataagcgtttttcattgttgttgatccgttttcctgttgcatgtgattattattattattattagtattattattattgacgatgaa...

Basic information

species Glycine max
transcript GLYMA0041S00260.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00260.3 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g08550.t01 (Vitis vinifera), 5'ss of exon 1
CGCCGGAGAATGTAGATCAGAGAAACACCACGGCGACGCTGACGTCATCATTGTCGGAGCCGGCGTCGCCGGCGCCTCTCTGGCGCACACTCTCGGCAAGgtaggtt-tgatttataagcgtttttcattgttgttgatccgttttcctgttgcatgtgattattattattattattagtattattattattgacgatgaa--
    |||||||| |||||  |||       ||  || |||||||||||||| ||||| ||||||||||| |||||| |||||||  | ||||||||||||||    | |  |||||     |  |  ||| |  || ||| |   |   ||||  |  ||  ||       | ||| || |  ||||    |  | || |   
TAATGGAGAATGCAGATCGAAGACCGCTTGCGAGGAGGCTGACGTCATCATCGTCGGGGCCGGCGTCGCGGGCGCCGCTCTGGCTAATACTCTCGGCAAGgtgatctctcttttatggttttgctggattctgatttatctgcggtgg-gttgt-tccgaaaatgcaggacagtataagcaaaattaa-gcttccaatcattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715569|gb|BW657362.1|BW657362
EST:     TTGTCGGAGCCGGCGTCGCCGGCGCCTCTCTGGCGCACACTCTCGGCAAG                         GATGGGCGTCGGGTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGA
genomic: TTGTCGGAGCCGGCGTCGCCGGCGCCTCTCTGGCGCACACTCTCGGCAAGgtaggtttga ... tgtattatagGATGGGCGTCGGGTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGA