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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgattgtagtgccaccttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaattttttttgtctgttccattattattgttttgtgactag

Basic information

species Glycine max
transcript GLYMA0041S00210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00210.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g16400.2 (Oryza sativa), 5'ss of exon 5
ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgattgtagtgccaccttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaattttttttgtctgttccattattattgttttgtgactag
 ||||||| || ||||| ||||| ||||||||||| ||||| || |||||| | |||   ||||||||||||||||  | ||   || | |   ||     |||| |  ||| |   || ||||| | || |  ||  || | |   ||| |  |      ||  ||     |                              
GTAACTGGTAAGGCTGTTATGCTGGATGAGATAATTAACTATGTTCAATCATTACAGAGGCAGGTTGAGgtatgatgtttgtaaaacttgtagggcc----attttcagttttac-ttgcatagtcc-tgctgcgatgtaatctggtatacccaatgtgtgcatgttgggcag------------------------------

upper sequence: GLYMA0041S00210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 4
ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgattgtagtgccaccttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagag--atattttatgataactcaataacacaattttttttgtctgttccattattattgttttgtgactag
|| ||||| || || ||||||||||||||||| || || || || || ||||| || |||||||||||||||||    | ||  || || | ||             ||||          |  ||    ||||||   |||||| |  | || | |    ||  | |  || | |                             
ATTACTGGGAAGGCAGTAATGCTTGATGAGATTATCAATTATGTACAGTCACTGCAACAACAGGTTGAGgtatg-ccattgt-tcaactctaatatagggg------cattagtggtgttgtgctgttgtttaagatttatatttaagaaaaagttagcctcatcaatccttatatg----------------------------