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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattgtagtgccaccttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaattttttttgtctgttccattattattgttttgtgactagTCAACTTATCAAAGAGATATTTTGCAGTTTCTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGAT

Basic information

species Glycine max
transcript GLYMA0041S00210.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00210.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g08600.t01 (Vitis vinifera), 3'ss of exon 4
gtatgattgtagtgccaccttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaattttttttgtctgttccattattattgttttgtgactagTCAACTTATCAAAGAGATATTTTGCAGTTTCTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGAT
                                                    | |  |||  |||||  ||  | |    | | || |     |||| |||| |  | |     | ||||  ||  |||| |      |||            | |||||||||||||| |||||||||||||| || || |||||||||||| ||||| ||||  |  | ||||| || |||
--------------------------------------------------gtttggacat-ctaagaattaaatca----accccactggtgtaattattttagcttttatatgttttatgattcagtga-tgacattcttgcttt-----cctattgcagTTTCTGTCAATGAAACTTGCCACTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactcaataacacaattttttttgtctgttccattattattgttttgtgactagTCAACTTATCAAAGAGATATTTTGCAGTTTCTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGAT
     caataac  putative branch site (score: 2)
                                        ttgtttt  putative PPT
      aataacacaatttttt  TA-rich tract