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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgagccttgccgtgcaagacacgcaggggggggggcggcgacttgaaacagagggattcgggccttaggatgcgggccacgaggcgagggcaagaatgggaatgggtgcatcagcagtaggtacctggccgtttaaggttcaatcttttgctaaagcgccattatgtgtccctgtagAACATGGAGTACAAGTTCGTGGAGCTGCTCAGCGTTCGCTTCATGGCGGCGGGCGAGGACCTGGTGCGGGCGCACGTGAGCTACCGCTACAACGTGGTAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09960
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16431069|gb|BI996295.1|BI996295
EST:     CTGTGTTCATCATGCAGCCCACCGGCGAGGGCCGGCTGGACTTCATCCAG                         AACATGGAGTACAAGTTCGTGGAGCTGCTCAGCGTTCGCTTCATGGCGGCG
genomic: CTGTGTTCATCATGCAGCCCACCGGCGAGGGCCGGCTGGACTTCATCCAGgtgcgagcct ... gtccctgtagAACATGGAGTACAAGTTCGTGGAGCTGCTCAGCGTTCGCTTCATGGCGGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctggccgtttaaggttcaatcttttgctaaagcgccattatgtgtccctgtagAACATGGAGTACAAGTTCGTGGAGCTGCTCAGCGTTCGCTTCATGGCGGCGGGCGAGGACCTGGTGCGGGCGCACGTGAGCTACCGCTACAACGTGGTAA
                          tgctaaa  putative branch site (score: 2)
                                            tgtccct  putative PPT
                   aatctttt  TA-rich tract