1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcgataagaccgttgccatccgatagggtagcgcgatgtggttgccataattccgccacagcattcaacctgcacgggcggtccttcttgccgccaacagGAGACGCAGCGGCTGATGATTGAGTTCCCCGACTACCCCACGGTGCTCATGCGCATGCTGAACCAGTGCATCCGCGAGCCGCACATCTACCTGGCTGTGT
species | Chlamydomonas reinhardtii |
transcript | EDP09960 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCTGTACATGCACGACCTGGCAGATGTCACCTTCAAGCAGATGCAG GAGACGCAGCGGCTGATGATTGAGTTCCCCGACTACCCCACGGTGCTCATG
genomic: TTTTCCTGTACATGCACGACCTGGCAGATGTCACCTTCAAGCAGATGCAGgtaatgccgg ... ccgccaacagGAGACGCAGCGGCTGATGATTGAGTTCCCCGACTACCCCACGGTGCTCATG
cataattccgccacagcattcaacctgcacgggcggtccttcttgccgccaacagGAGACGCAGCGGCTGATGATTGAGTTCCCCGACTACCCCACGGTGCTCATGCGCATGCTGAACCAGTGCATCCGCGAGCCGCACATCTACCTGGCTGTGT
tccttcttgccgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgataagaccgttgccatccgatagggtagcgcgatgtggttgccataattccgccacagcattcaacctgcacgggcggtccttcttgccgccaacagGAGACGCAGCGGCTGATGATTGAGTTCCCCGACTACCCCACGGTGCTCATGCGCATGCTGAACCAGTGCATCCGCGAGCCGCACATCTACCTGGCTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -cgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgca