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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGGGCTCTGGAGGCAATCCGCGTTAAAATCCTCATCAAGTCAGAAGGCGGGCAGCCCAAAACCATACGGgtaagcggagcggggcagctgcgcaagcttgaattgtgttttgggaccttgctggcccttggagcacccacgagcgccgccctgcctgcctgcccacatgtgtgcgccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09960
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771472|gb|AV622295.1|AV622295
EST:     GCGTTAAAATCCTCATCAAGTCAGAAGGCGGGCAGCCCAAAACCATACGG                         GTGGAGCTGACCAGCGAGTC
genomic: GCGTTAAAATCCTCATCAAGTCAGAAGGCGGGCAGCCCAAAACCATACGGgtaagcggag ... tgcgccgcagGTGGAGCTGACCAGCGAGTC
EST: gi|16431069|gb|BI996295.1|BI996295
EST:     GCGTTAAAATCCTCATCAAGTCAGAAGGCGGGCAGCCCAAAACCATACGG                         GTGGAGCTGACCAGCGAGTCCAACCTGTTTTTCCTGTACATGCACGACCTG
genomic: GCGTTAAAATCCTCATCAAGTCAGAAGGCGGGCAGCCCAAAACCATACGGgtaagcggag ... tgcgccgcagGTGGAGCTGACCAGCGAGTCCAACCTGTTTTTCCTGTACATGCACGACCTG