1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGCCACCGAGTCCATGCTGGTGTACGACGAGGCGCGGGGCGTGTACCTGGAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcgtggagggcagggcaagattgctagcggcgtggggtagggggggttaagccatccatgggatggtgtgtatcaaatgtgaagtgaaggggg...
species | Chlamydomonas reinhardtii |
transcript | EDP09906 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCTGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTEST: gi|161803012|gb|FC090262.1|FC090262
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCTGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTEST: gi|161822194|gb|FC110840.1|FC110840
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCTGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTEST: gi|15369830|gb|BI529256.1|BI529256
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCACCGAGTCCATGCTGGTGTACGACGAGGCGCGGGGCGTGTACCTGGAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcgtggagggcagggcaagattgctagcggcgtggggtagggggggttaagccatccatgggatggtgtgtatcaaatgtgaagtgaaggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtga