1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcccactgcaggccgcttcgcggaggctgcccgctccgctgccacgcctctcaccacggccctcctcacgccccacccgcgccctccgcgctctccccagGTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCCGACCTGCTGTTCAACATCACCGGCCTGCCGCCCAAGTACTTCCCGGTGC
species | Chlamydomonas reinhardtii |
transcript | EDP09906 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTTCATTGCCGACTGCGTCACCGAGCAGAACAAGGTCAACAAG GTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCCEST: gi|161803012|gb|FC090262.1|FC090262
genomic: CCTTCATTGCCGACTGCGTCACCGAGCAGAACAAGGTCAACAAGgtgcgcggct ... ctctccccagGTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCC
EST: TGGCGTCCTTCATTGCCGACTGCGTCACCGAGCAGAACAAGGTCAACAAG GTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCCEST: gi|161822194|gb|FC110840.1|FC110840
genomic: TGGCGTCCTTCATTGCCGACTGCGTCACCGAGCAGAACAAGGTCAACAAGgtgcgcggct ... ctctccccagGTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCC
EST: TGGCGTCCTTCATTGCCGACTGCGTCACCGAGCAGAACAAGGTCAACAAG GTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCC
genomic: TGGCGTCCTTCATTGCCGACTGCGTCACCGAGCAGAACAAGGTCAACAAGgtgcgcggct ... ctctccccagGTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCC
gcctctcaccacggccctcctcacgccccacccgcgccctccgcgctctccccagGTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCCGACCTGCTGTTCAACATCACCGGCCTGCCGCCCAAGTACTTCCCGGTGC
tcctcac putative branch site (score: 2)
ccctccgcgctctccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccactgcaggccgcttcgcggaggctgcccgctccgctgccacgcctctcaccacggccctcctcacgccccacccgcgccctccgcgctctccccagGTGCTGCCCATCGGCGGCCCCAGCAAGGCCTTCACGGCCAAGCAGCAGGCCGACCTGCTGTTCAACATCACCGGCCTGCCGCCCAAGTACTTCCCGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - -ctcacca