1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagttggtggggtggtgcccagcttatgagcgctcatatctgtgcggcggctcgctcctatcttcccctgcctcctccgctgcccccgccctccccgcagGCTGCCGGTGACATCACCTATTCCATCGTGCGCCCCACCGCCTTCTTCAAGTCCATTGCCGGCCAGATCGACATCGTGAAGAAGGGCAACCCCTACGTCA
species | Chlamydomonas reinhardtii |
transcript | EDP09906 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATCTGCGTGCAGAAGCCGCTGCTGGAGTTCCAGAAGGCCAAGCTCCAGTTCGAGTCGGACCTGCAGEST: gi|161803012|gb|FC090262.1|FC090262
genomic: CGCTGCTGGAGTTCCAGAAGGCCAAGCTCCAGTTCGAGTCGGACCTGCAGgtaggggata ... ctccccgcagG
EST: CGCTGCTGGAGTTCCAGAAGGCCAAGCTCCAGTTCGAGTCGGACCTGCAG GCTGCCGGTGACATCACCTATTCCATCGTGCGCCCCACCGCCTTCTTCAAG
genomic: CGCTGCTGGAGTTCCAGAAGGCCAAGCTCCAGTTCGAGTCGGACCTGCAGgtaggggata ... ctccccgcagGCTGCCGGTGACATCACCTATTCCATCGTGCGCCCCACCGCCTTCTTCAAG
ggcggctcgctcctatcttcccctgcctcctccgctgcccccgccctccccgcagGCTGCCGGTGACATCACCTATTCCATCGTGCGCCCCACCGCCTTCTTCAAGTCCATTGCCGGCCAGATCGACATCGTGAAGAAGGGCAACCCCTACGTCA
ctcctatcttcccctg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttggtggggtggtgcccagcttatgagcgctcatatctgtgcggcggctcgctcctatcttcccctgcctcctccgctgcccccgccctccccgcagGCTGCCGGTGACATCACCTATTCCATCGTGCGCCCCACCGCCTTCTTCAAGTCCATTGCCGGCCAGATCGACATCGTGAAGAAGGGCAACCCCTACGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- gttggtg
- - - - - - - - - - - - - - - -gctcata