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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcggcagtggtgtgcagttgggcggggctaagcgctgatgcgctgctgtgaaggattacgagtccctgggcttcgacccaaatcaacccaaatcaacccgaaccaatacccaacccgcttgctcgctccccccccccacacacacagGACGACCCCGAGGACGAGTTTGACGACGACGTCCGCATGTGGGTGCACCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09534
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22051798|gb|BQ809859.1|BQ809859
EST:     GCCTGGGCGTGTGCGGCGGTGCGCATGATCGCGCAGAACACCAGCCAG                         GACGACCCCGAGGACGAGTTTGACGACGACGTCCGCATGTGGGTGCACCAG
genomic: GCCTGGGCGTGTGCGGCGGTGCGCATGATCGCGCAGAACACCAGCCAGgtgcgtgcgg ... acacacacagGACGACCCCGAGGACGAGTTTGACGACGACGTCCGCATGTGGGTGCACCAG
EST: gi|22056101|gb|BQ812190.1|BQ812190
EST:     GCCTGGGCGTGTGCGGCGGTGCGCATGATCGCGCAGAACACCAGCCAG                         GACGACCCCGAGGACGAGTTTGACGACGACGTCCGCATGTGGGTGCACCAG
genomic: GCCTGGGCGTGTGCGGCGGTGCGCATGATCGCGCAGAACACCAGCCAGgtgcgtgcgg ... acacacacagGACGACCCCGAGGACGAGTTTGACGACGACGTCCGCATGTGGGTGCACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacccgaaccaatacccaacccgcttgctcgctccccccccccacacacacagGACGACCCCGAGGACGAGTTTGACGACGACGTCCGCATGTGGGTGCACCAG
                         cttgctcgctcccccc  CT-rich tract